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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 | import unittest import numpy as np from mapgen import graph as G from mapgen.sphere import latlon_to_xyz, east_north from tests.helpers import small_grid class GraphTest(unittest.TestCase): def setUp(self): self.g = small_grid(2) def test_mean_max_min_diffuse(self): g = self.g f = np.zeros(g.n) f[0] = 6.0 m = G.nbr_mean(g, f) self.assertAlmostEqual(m[g.nbr_idx[g.nbr_ptr[0]]], 6.0 / g.counts[g.nbr_idx[g.nbr_ptr[0]]]) self.assertEqual(G.nbr_max(g, f)[g.nbr_idx[g.nbr_ptr[0]]], 6.0) d = G.diffuse(g, f, 10) self.assertLess(d.max(), 6.0) self.assertGreater(np.count_nonzero(d > 1e-6), 20) def test_gradient_of_linear_field(self): g = self.g f = g.xyz[:, 2] * g.radius_km # height ∝ z → gradient points north near the equator gr = G.gradient(g, f) eq = np.abs(g.lat) < 20 _, n = east_north(g.xyz[eq]) cos_to_north = np.sum(gr[eq] * n, axis=1) / np.linalg.norm(gr[eq], axis=1) self.assertGreater(np.median(cos_to_north), 0.99) self.assertAlmostEqual(float(np.median(np.linalg.norm(gr[eq], axis=1))), 1.0, delta=0.1) def test_distance_matches_great_circle(self): g = self.g i = g.cell_index(0.0, 0.0) d = G.distance_to(g, np.arange(g.n) == i) gc = g.radius_km * np.arccos(np.clip(g.xyz @ g.xyz[i], -1, 1)) far = gc > 3000 ratio = d[far] / gc[far] self.assertTrue(np.all(ratio >= 0.999) and np.median(ratio) < 1.15) self.assertTrue(np.all(np.isinf(G.distance_to(g, np.zeros(g.n, bool))))) def test_nearest_source_labels(self): g = self.g a, b = g.cell_index(0.0, -90.0), g.cell_index(0.0, 90.0) _, src = G.nearest_source(g, [a, b]) self.assertEqual(src[g.cell_index(0.0, -60.0)], a) self.assertEqual(src[g.cell_index(0.0, 60.0)], b) def test_priority_flood_fills_basin_and_drains(self): g = self.g ocean = g.lat < -30 z = np.where(ocean, -1000.0, 500.0 + 10 * g.lat) pit = g.cell_index(40.0, 0.0) z[pit] = -50.0 # land pit below sea level, not connected to ocean zf = G.priority_flood(g, z, ocean) self.assertGreater(zf[pit], z[pit]) recv, slope, dist = G.steepest_receivers(g, zf) recv[ocean] = np.flatnonzero(ocean) levels = G.receiver_levels(recv) self.assertEqual(sum(len(l) for l in levels), g.n) self.assertTrue(np.all(ocean[levels[0]])) def test_priority_flood_needs_sink(self): with self.assertRaisesRegex(ValueError, "no sink"): G.priority_flood(self.g, np.ones(self.g.n), np.zeros(self.g.n, bool)) def test_accumulate_conserves(self): g = self.g ocean = g.lat < -30 z = np.where(ocean, -1000.0, 1000.0 + 20 * g.lat) zf = G.priority_flood(g, z, ocean) recv, _, _ = G.steepest_receivers(g, zf) recv[ocean] = np.flatnonzero(ocean) lv = G.receiver_levels(recv) w = np.where(ocean, 0.0, 1.0) acc = G.accumulate(recv, lv, w) self.assertAlmostEqual(acc[lv[0]].sum(), w.sum()) def test_cycle_detected(self): with self.assertRaisesRegex(ValueError, "cycle"): G.receiver_levels(np.array([1, 0, 2])) def test_components(self): g = self.g m = (np.abs(g.lat) < 10) & (np.abs(g.lon) < 20) | (np.abs(g.lat - 50) < 8) & (np.abs(g.lon) < 20) lab = G.components(g, m) self.assertEqual(len(np.unique(lab[m])), 2) self.assertTrue(np.all(lab[~m] == -1)) class SmoothKmTest(unittest.TestCase): def test_constant_preserved_and_spike_decays(self): g = small_grid(3) np.testing.assert_allclose(G.smooth_km(g, np.full(g.n, 5.0), 1000.0), 5.0, rtol=1e-4) i = g.cell_index(0.0, 0.0) s = G.smooth_km(g, (np.arange(g.n) == i).astype(float), 1000.0) d = g.radius_km * np.arccos(np.clip(g.xyz @ g.xyz[i], -1, 1)) near, far = s[(d > 800) & (d < 1200)].mean(), s[(d > 2800) & (d < 3200)].mean() self.assertTrue(near > far > 0) def test_resolution_independent(self): vals = [] for res in (2, 3): g = small_grid(res) d = g.radius_km * np.arccos(np.clip(g.xyz @ g.xyz[g.cell_index(0.0, 0.0)], -1, 1)) s = G.smooth_km(g, (d < 2000).astype(float), 1500.0) vals.append(s[g.cell_index(0.0, 30.0)]) # ~6700 km away self.assertAlmostEqual(vals[0], vals[1], delta=0.25 * max(vals)) self.assertGreater(min(vals), 0.005) class OceanMaskTest(unittest.TestCase): def test_inland_depression_is_not_ocean(self): g = small_grid(3) z = np.where(g.lat < 0, -3000.0, 500.0) c = g.xyz[g.cell_index(40.0, 0.0)] d = g.radius_km * np.arccos(np.clip(g.xyz @ c, -1, 1)) z[d < 600] = -50.0 # interior basin below sea level ocean = G.ocean_mask(g, z, 1.0e6) self.assertTrue(ocean[g.lat < -5].all()) self.assertFalse(ocean[d < 600].any()) class SmoothKmRobustTest(unittest.TestCase): def test_zero_and_tiny_fields(self): g = small_grid(3) np.testing.assert_array_equal(G.smooth_km(g, np.zeros(g.n), 25.0), 0.0) f = np.where(g.lat > 0, 1e-9, 0.0) s = G.smooth_km(g, f, 25.0) self.assertTrue(np.all(np.isfinite(s)) and s.max() <= 1e-9 * (1 + 1e-6)) def test_femto_scale_field(self): g = small_grid(3) rng = np.random.default_rng(0) f = np.where(rng.random(g.n) < 0.06, rng.random(g.n) * 8e-14, 0.0) s = G.smooth_km(g, f, 25.0) self.assertTrue(np.all(np.isfinite(s))) self.assertAlmostEqual(float(s.sum() / f.sum()), 1.0, delta=0.05) def _flood_ref(g, z, sink_mask, eps=0.01): """The original pure-Python priority flood (oracle for the compiled one).""" import heapq has_open = np.bincount(g.src, weights=(~sink_mask)[g.dst].astype(np.float64), minlength=g.n) > 0 zf, done = np.asarray(z, dtype=np.float64).tolist(), sink_mask.tolist() ptr, idx = g.nbr_ptr.tolist(), g.nbr_idx.tolist() heap = [(zf[i], i) for i in np.flatnonzero(sink_mask & has_open).tolist()] heapq.heapify(heap) while heap: zc, c = heapq.heappop(heap) for k in range(ptr[c], ptr[c + 1]): n = idx[k] if not done[n]: done[n] = True zf[n] = max(zf[n], zc + eps) heapq.heappush(heap, (zf[n], n)) return np.array(zf) def _steepest_ref(g, z): """The original lexsort version (oracle).""" slope = (z[g.src] - z[g.dst]) / g.edge_km first = np.lexsort((-slope, g.src))[g.nbr_ptr[:-1]] s = slope[first] down = s > 0 return (np.where(down, g.dst[first], np.arange(g.n)), np.where(down, s, 0.0), np.where(down, g.edge_km[first], np.inf)) def _accumulate_ref(recv, levels, w): acc = np.asarray(w, dtype=np.float64).copy() for lv in reversed(levels[1:]): acc += np.bincount(recv[lv], weights=acc[lv], minlength=len(acc)) return acc class FastPathsTest(unittest.TestCase): """The speed-ups (numba flood, sort-free receivers, per-level accumulate) give bit-identical results.""" def fields(self, g): rng = np.random.default_rng(7) rough = rng.normal(0, 300, g.n) flat = np.round(rng.normal(0, 2, g.n)) # many exact ties: tie order matters pits = np.where(rng.random(g.n) < 0.2, -50.0, rough) return {"rough": rough, "flat": flat, "pits": pits} def test_flood_matches_reference(self): g = small_grid(3) for name, z in self.fields(g).items(): sink = z < np.quantile(z, 0.1) for eps in (0.01, 0.0): with self.subTest(name=name, eps=eps): want = _flood_ref(g, z, sink, eps) got = G.priority_flood(g, z, sink, eps) self.assertTrue(np.array_equal(got, want)) py = G._flood_py(z, sink, g.nbr_ptr, g.nbr_idx, np.flatnonzero(sink & (np.bincount(g.src, weights=(~sink)[g.dst].astype(float), minlength=g.n) > 0)), eps) self.assertTrue(np.array_equal(py, want)) def test_steepest_receivers_match_reference(self): g = small_grid(3) for name, z in self.fields(g).items(): with self.subTest(name=name): for got, want in zip(G.steepest_receivers(g, z), _steepest_ref(g, z)): self.assertTrue(np.array_equal(got, want)) def test_accumulate_matches_reference(self): g = small_grid(3) rng = np.random.default_rng(3) for name, z in self.fields(g).items(): with self.subTest(name=name): zf = G.priority_flood(g, z, z < np.quantile(z, 0.1)) recv, _, _ = G.steepest_receivers(g, zf) lv = G.receiver_levels(recv) w = rng.random(g.n) * 1e3 * np.where(rng.random(g.n) < 0.1, -0.0, 1.0) # with negative zeros got, want = G.accumulate(recv, lv, w), _accumulate_ref(recv, lv, w) self.assertTrue(np.array_equal(got, want)) self.assertTrue(np.array_equal(np.signbit(got), np.signbit(want))) class SweepTest(unittest.TestCase): def test_sweep_matches_full_bincount(self): from mapgen import hydrology as HY def sweep_ref(recv, levels, water, outlets, cap): acc = np.asarray(water, dtype=np.float64).copy() loss = np.zeros(len(acc)) is_out = np.zeros(len(acc), bool) is_out[outlets] = True cap_cell = np.zeros(len(acc)) cap_cell[outlets] = cap for lv in reversed(levels[1:]): push = acc[lv].copy() o = is_out[lv] if o.any(): cells = lv[o] lost = np.minimum(acc[cells], cap_cell[cells]) loss[cells] = lost push[o] = acc[cells] - lost acc += np.bincount(recv[lv], weights=push, minlength=len(acc)) return acc, loss g = small_grid(3) rng = np.random.default_rng(11) z = rng.normal(0, 300, g.n) zf = G.priority_flood(g, z, z < np.quantile(z, 0.1)) recv, _, _ = G.steepest_receivers(g, zf) lv = G.receiver_levels(recv) water = rng.random(g.n) * np.where(rng.random(g.n) < 0.1, -0.0, 1.0) # with negative zeros outlets = rng.choice(g.n, 200, replace=False) cap = rng.random(200) * 2 for got, want in zip(HY._sweep(recv, lv, water, outlets, cap), sweep_ref(recv, lv, water, outlets, cap)): self.assertTrue(np.array_equal(got, want)) self.assertTrue(np.array_equal(np.signbit(got), np.signbit(want))) class LeavesTest(unittest.TestCase): def test_leaves_all_matches_the_walk(self): from mapgen import hydrology as HY g = small_grid(3) rng = np.random.default_rng(4) for seed in range(3): z = rng.normal(0, 300, g.n) ocean = z < np.quantile(z, 0.2) zf = G.priority_flood(g, z, ocean) lab = G.components(g, ~ocean & (zf - z > 1.0)) recv, _, _ = G.steepest_receivers(g, zf) recv = np.where(ocean, np.arange(g.n), recv) lv = G.receiver_levels(recv) xs = np.flatnonzero(lab >= 0) for limit in (100000, 3): want = np.array([HY._leaves(recv, lab, x, limit) for x in xs]) got = HY._leaves_all(recv, lab, lv, limit)[xs] self.assertGreater(want.sum(), 0) self.assertTrue(np.array_equal(got, want), (seed, limit)) class BicgstabJacobiTest(unittest.TestCase): """The fused solver walks scipy's iterates exactly: same answers bit for bit, same exit codes.""" def systems(self): from scipy import sparse rng = np.random.default_rng(0) for n in (2000, 9000): i = np.repeat(np.arange(n), 6) j = (i + rng.integers(-50, 50, len(i))) % n L = sparse.csr_matrix((rng.random(len(i)), (i, j)), shape=(n, n)) S = L + L.T yield (sparse.diags(np.asarray(S.sum(1)).ravel()) - S).tocsr() * 40 + sparse.identity(n, format="csr") yield (sparse.identity(n, format="csr") * (1 + np.asarray(L.sum(1)).ravel().max() * 0.6) - L).tocsr() def setUp(self): self.min_n = G.JIT_MIN_N G.JIT_MIN_N = 0 # the compiled path even on small test systems def tearDown(self): G.JIT_MIN_N = self.min_n def test_matches_scipy_bicgstab(self): from scipy.sparse import linalg as splinalg rng = np.random.default_rng(1) for k, A in enumerate(self.systems()): for rtol, maxiter in ((1e-6, 5000), (1e-9, 5000), (1e-12, 7)): b = rng.normal(size=A.shape[0]) inv = 1.0 / A.diagonal() M = splinalg.LinearOperator(A.shape, matvec=lambda x: inv * x) want = splinalg.bicgstab(A, b, x0=b * 0.5, rtol=rtol, maxiter=maxiter, M=M) got = G.bicgstab_jacobi(A, b, b * 0.5, inv, rtol, maxiter) with self.subTest(k=k, rtol=rtol, maxiter=maxiter): self.assertEqual(got[1], want[1]) self.assertTrue(np.array_equal(got[0], want[0])) def test_zero_right_hand_side_and_zero_start(self): A = next(self.systems()) inv = 1.0 / A.diagonal() x, info = G.bicgstab_jacobi(A, np.zeros(A.shape[0]), np.zeros(A.shape[0]), inv, 1e-6, 100) self.assertEqual(info, 0) self.assertFalse(x.any()) class PmapTest(unittest.TestCase): def test_order_and_same_floats_as_serial(self): import os from unittest import mock g = small_grid(2) fields = [np.random.default_rng(i).normal(size=g.n) for i in range(4)] serial = [G.smooth_km(g, f, 900.0) for f in fields] with mock.patch.dict(os.environ, {"WORLDGEN_THREADS": "4"}): self.assertEqual(G.workers(), 4) got = G.pmap(lambda f: G.smooth_km(g, f, 900.0), fields) for a, b in zip(serial, got): self.assertTrue(np.array_equal(a, b)) with mock.patch.dict(os.environ, {"WORLDGEN_THREADS": "3"}): self.assertEqual(G.pmap(lambda k: k * k, range(9)), [k * k for k in range(9)]) with mock.patch.dict(os.environ, {"WORLDGEN_THREADS": "x"}): self.assertEqual(G.workers(), 3) class ComponentsTest(unittest.TestCase): def test_same_labels_as_scipy(self): from scipy import sparse from scipy.sparse import csgraph g = small_grid(3) rng = np.random.default_rng(11) def scipy_labels(mask): # the previous implementation, as the oracle e = mask[g.src] & mask[g.dst] m = sparse.csr_matrix((np.ones(int(e.sum())), (g.src[e], g.dst[e])), shape=(g.n, g.n)) _, lab = csgraph.connected_components(m, directed=False) return np.where(mask, lab, -1) for p in (0.0, 0.2, 0.45, 0.6, 0.9, 1.0): for _ in range(3): mask = rng.random(g.n) < p want, got = scipy_labels(mask), G.components(g, mask) self.assertEqual(got.dtype, want.dtype) self.assertTrue(np.array_equal(got, want), p) smooth = G.smooth_km(g, rng.normal(size=g.n), 2000.0) > 0 # big blobs, many cells each self.assertTrue(np.array_equal(G.components(g, smooth), scipy_labels(smooth))) self.assertGreater(len(np.unique(G.components(g, smooth))), 2) |